Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005297394 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 43870882 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA | 73970 | 0.16860841776556942 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGGAGGT | 22830 | 0.0 | 13.730254 | 3 |
ATAGGGG | 13625 | 0.0 | 13.566302 | 38 |
CACCGAA | 26950 | 0.0 | 13.275108 | 45 |
GGAGGTC | 23235 | 0.0 | 13.230124 | 4 |
ACTCTCC | 23185 | 0.0 | 12.647613 | 11 |
GGTCACT | 23260 | 0.0 | 12.529517 | 7 |
GCACCGA | 28660 | 0.0 | 12.474424 | 44 |
GGCATAG | 14830 | 0.0 | 12.312522 | 35 |
CGTAGGG | 8535 | 0.0 | 12.224825 | 37 |
AGCTTAG | 15210 | 0.0 | 12.176606 | 45 |
GCGTAGG | 8795 | 0.0 | 11.991269 | 36 |
GTCACTC | 24455 | 0.0 | 11.990823 | 8 |
GGCGTAG | 9060 | 0.0 | 11.764738 | 35 |
CATAGGG | 16670 | 0.0 | 11.142242 | 37 |
GAGCTTA | 16665 | 0.0 | 11.112822 | 44 |
TAGGGGA | 26525 | 0.0 | 10.935664 | 39 |
CACTCTC | 26500 | 0.0 | 10.861858 | 10 |
TTCTATA | 35475 | 0.0 | 10.743756 | 2 |
TTTCTAT | 36485 | 0.0 | 10.630929 | 1 |
TGGCGTA | 10110 | 0.0 | 10.476166 | 34 |