FastQCFastQC Report
Thu 12 May 2022
EGAF00005297564

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005297564
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56142309
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG1026930.182915526327925No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA770450.13723161973975814No Hit
CCGGGAGGTCACTCTCCCCGGGCTCTGTCCAAGTGGCGTAGGGGAGCATAG637800.11360416259331264No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)