FastQCFastQC Report
Sat 28 May 2022
EGAF00005297621

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005297621
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51234400
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCTGCCACCTGCTCTTGTCCACGGTGAGCTTGCTGTAGAGGAAGAAGG961300.18762784379245195No Hit
CTCAACTTTCTTGTCCACCTTGGTGTTGCTGGGCTTGTGATTCACGTTGCA840360.16402260980903455No Hit
CTGCTGCCACCTGCTCTTGTCCACGGTGAGCTTGCTGTAGAGGAAGAAGGA660170.1288528800961854No Hit
TTGTGATTCACGTTGCAGATGTAGGTCTGGGTGCCCAAGCTGCTGGAGGGC610960.11924800524647503No Hit
CTGGGCTTGTGATTCACGTTGCAGATGTAGGTCTGGGTGCCCAAGCTGCTG597950.11670869572006307No Hit
GTCGGAGTCCAGCACGGGAGGCGTGGTCTTGTAGTTGTTCTCCGGCTGCCC584210.11402690379901004No Hit
CCACGGTGAGCTTGCTGTAGAGGAAGAAGGAGCCGTCGGAGTCCAGCACGG559710.10924496041721968No Hit
GTAGAGTCCTGAGGACTGTAGGACAGCCGGGAAGGTGTGCACGCCGCTGGT557970.1089053448464313No Hit
GTAGTGGTTGTGCAGACCCTCATGCATCACGGAGCATGAGAAGACGTTCCC536870.10478701809721594No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)