FastQCFastQC Report
Wed 11 May 2022
EGAF00005297657

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005297657
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50099360
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG1318340.2631450781007981No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCAA618230.12340077797401004No Hit
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCAG540880.10796145898869765No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)