FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005298062

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005298062
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28451947
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCGG390790.13735088147043154No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA365390.1284235486590777No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG324080.11390433139777745No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)