FastQCFastQC Report
Fri 27 May 2022
EGAF00005298261

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005298261
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82328540
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCCAATACGGAGAGAAGAACGATCATCAATGGCTGACGGCAGTTGCA2466170.299552257333848No Hit
CCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGATCATCA919140.11164293694507398No Hit
CTCAACTTTCTTGTCCACCTTGGTGTTGCTGGGCTTGTGATTCACGTTGC828500.10063338910176228No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)