EGAF00005298344 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005298344
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	24382223
Sequences flagged as poor quality	0
Sequence length	51
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAAC	66945	0.2745647925539849	No Hit
TTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA	62112	0.25474297401020407	No Hit
CCGAAAACCACGAGGAAGAGAGGTAGCGTTTTCTCCTGAGCGTGAAGCCGG	54814	0.22481133077980625	No Hit
GTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGT	53840	0.22081661709024647	No Hit
CTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAGAGGTAGCGTTTTC	44810	0.18378143781229464	No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG	33542	0.1375674400156212	No Hit
CTGGGAGGTCACTCTCCCCAGGCTCTGTCCAAGTGGCATAGGGGAGCTTAG	32760	0.13436018528745308	No Hit
TCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAA	30338	0.12442671859739779	No Hit
CAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAG	28930	0.11865201954719222	No Hit
CGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAGAAGAAACT	25832	0.10594604109723711	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGGGATC	8540	18.336954	2
CGTGGCG	12925	15.980479	1
GTGGCGA	13285	15.513499	2
CAGGGAT	11280	15.059671	1
ACCCGGC	5330	14.985485	5
GGGAGGT	17365	14.952201	3
GGGATCA	10805	14.867827	3
CCGGTAA	1305	14.654708	12
TGGCGAC	14135	14.516873	3
GTCACTC	17230	14.455432	8
ATAGCTC	5085	14.3800745	39
GGTCACT	17225	14.368195	7
TCAGACG	4595	14.346897	2
GCGTTCG	2035	13.930762	15
GGATCAT	11165	13.864487	4
CAGACGT	6930	13.603744	1
GGAGGTC	19085	13.557505	4
GGCGACC	15155	13.524978	4
CGTCGAT	2015	13.399078	12
GCGACCC	15585	13.324919	5