FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005299225

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005299225
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences182542154
Sequences flagged as poor quality0
Sequence length36-100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG3195840.17507408179263625No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAACCAAACCATTTAC2319360.12705887101562305No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA1897530.10395023606437777No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC1862490.10203067944514341No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)