FastQCFastQC Report
Tue 28 Jun 2022
EGAF00005299235

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005299235
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences173602474
Sequences flagged as poor quality0
Sequence length36-100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA2790360.16073273241486177No Hit
CCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCG2789840.16070277892468282No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC2655290.15295231334088014No Hit
ATCACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGG2568370.1479454722517376No Hit
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC2408220.13872037330527903No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT2152700.12400168905427003No Hit
CTAAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACT1896640.10925189925576752No Hit
CCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGCG1867890.10759581686606609No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)