FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005299770

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005299770
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1237952
Sequences flagged as poor quality0
Sequence length35-101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACAC38110.3078471540092023No Hit
TCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATT33030.2668116372848059No Hit
GAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATG19910.1608301452721915No Hit
ACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGC14520.11729049268469213No Hit
AGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGA14470.11688659980354651No Hit
CCTTTCTTTTCATAGAGCAGTTAGGAAACACTCTGTTTGTAAAGTCTGCA14120.11405934963552705No Hit
TGATTGCCATTCTAACTGGTGTGAGATGGTATCTCATTGTGGTTTTGATT14060.1135746781781523No Hit
ACTCTGTGAGTTGAACGCACACATCACAAAGGAGTTTCTGAGAATCATTC13920.11244377811094453No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)