FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005299776

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005299776
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1489241
Sequences flagged as poor quality0
Sequence length35-101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACAC55990.37596332628500023No Hit
TCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATT51170.3435978461511602No Hit
ACTCTGTGAGTTGAACGCACACATCACAAAGGAGTTTCTGAGAATCATTC29350.19708025766145307No Hit
CCTTTCTTTTCATAGAGCAGTTAGGAAACACTCTGTTTGTAAAGTCTGCA29250.19640877467112441No Hit
GAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATG19340.12986481032955716No Hit
AGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGA18350.12321712872530369No Hit
TGATTGCCATTCTAACTGGTGTGAGATGGTATCTCATTGTGGTTTTGATT18320.1230156838282051No Hit
TGATTGCTTTGTTTTCAATTCGAAGATGATTACATTGGATTCCATTCTAT17090.11475644304716295No Hit
ATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATC15990.10737013015354802No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)