EGAF00005299778 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005299778
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1643325
Sequences flagged as poor quality	0
Sequence length	35-101
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACAC	6391	0.3889066374575936	No Hit
TCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATT	5746	0.34965694552203613	No Hit
ACTCTGTGAGTTGAACGCACACATCACAAAGGAGTTTCTGAGAATCATTC	3683	0.22411878356381115	No Hit
CCTTTCTTTTCATAGAGCAGTTAGGAAACACTCTGTTTGTAAAGTCTGCA	3406	0.20726271431396712	No Hit
AGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGA	2518	0.1532259291375717	No Hit
GAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATG	2468	0.1501833173596215	No Hit
TGATTGCTTTGTTTTCAATTCGAAGATGATTACATTGGATTCCATTCTAT	2284	0.1389865060167648	No Hit
TGATTGCCATTCTAACTGGTGTGAGATGGTATCTCATTGTGGTTTTGATT	2073	0.12614668431381498	No Hit
ATGGACTCGAATGGAATCATCGAATGGACTCGAATGGAATCATCATCGAA	1873	0.1139762372020142	No Hit
CTTTTCTTTTCATTCAGCAGTTTGGAAACACTCTGTTTGTAAAGTCTGCA	1691	0.10290113033027551	No Hit
ATAGGGAATCCTTTCCCCATTGCTTGTTTTTCTCAGGTTTGTCAAAGATC	1669	0.10156238114797742	No Hit
ACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGC	1645	0.10010192749456133	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTCTATC	2205	75.201935	5
TGATCGC	400	73.39968	1
GATCGCC	415	71.712776	2
AGTCTAT	2395	69.433266	4
ACGGCGC	135	66.48908	4
CAGTCTA	2540	66.2095	3
CGTCATT	730	66.00569	3
CTCGTCA	750	64.4023	1
CCCGAAT	470	62.46781	1
TCGTCAT	785	61.98286	2
GTGAGTT	2895	61.03143	6
CCGAATA	475	60.665295	2
AACGGCG	150	59.83653	3
TCGCCAT	495	58.21771	4
CTATCAT	2620	58.071674	7
TCCAGTC	2945	58.047615	1
TCTATCA	2800	57.028137	6
TTCATAG	3010	56.983604	9
CGGCGCA	150	56.690685	5
ATCATTG	2580	56.40801	9