FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005299783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005299783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1179586
Sequences flagged as poor quality0
Sequence length35-101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACAC25350.21490590766590992No Hit
TCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATT21430.18167390932072777No Hit
AGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGA16180.13716676867985889No Hit
ACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGC15940.13513215653627628No Hit
GAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAATG14870.12606117739613729No Hit
ACTCTGTGAGTTGAACGCACACATCACAAAGGAGTTTCTGAGAATCATTC13810.1170749737619809No Hit
CCTTTCTTTTCATAGAGCAGTTAGGAAACACTCTGTTTGTAAAGTCTGCA13050.11063203530730273No Hit
TGATTGCCATTCTAACTGGTGTGAGATGGTATCTCATTGTGGTTTTGATT12320.1044434233705724No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)