FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005299788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005299788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences877049
Sequences flagged as poor quality0
Sequence length35-101
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTCTGTGAGTTGAACGCACACATCACAAAGGAGTTTCTGAGAATCATTC16200.18471031835165425No Hit
CCTTTCTTTTCATAGAGCAGTTAGGAAACACTCTGTTTGTAAAGTCTGCA13730.15654769573877858No Hit
AAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACAC11950.136252364463103No Hit
TCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATT9330.10637946112474903No Hit
ACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGC9300.10603740497965336No Hit
AGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGA9280.1058093675495896No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)