FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005301483

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005301483
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences347
Sequences flagged as poor quality0
Sequence length199-201
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACGAAGGATGCAAGCGTTATCCGGATTCATTGGGTTTAAAGGGAGCGTA11934.293948126801155No Hit
TACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCA4412.680115273775217No Hit
TACAGAGGGTGCGAGCGTTAATCGGAATTACTGGGCGTAAAGCGAGTGTA288.069164265129682No Hit
TACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGCGCGCGCA174.899135446685879No Hit
TACGTAGGTCCCGAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGCGCA133.7463976945244957No Hit
TACGGAAGGTCCGGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTA92.5936599423631126No Hit
TACGTAGGGCGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGAGCTCGTA61.729106628242075No Hit
TACGAAGGGGGCTAGCGTTGCTCGGAATCACTGGGCGTAAAGGGTGCGTA61.729106628242075No Hit
TACGTATGTCGCAAGCGTTATCCGGAATTATTGGGCATAAAGGGCATCTA51.440922190201729No Hit
TACGGAAGGTCCAGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTA51.440922190201729No Hit
TACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGCGCA51.440922190201729No Hit
TACGTAGGTCCCGAGCGTTATCCGGATTTATTGGGCGTAAAGCGAGCGCA41.1527377521613833No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41.1527377521613833No Hit
TACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGCGCGCGTA41.1527377521613833No Hit
TACGTAGGGCGCGAGCGTTGTCCGGAATTATTGGGCGTAAAGGGCTTGTA41.1527377521613833No Hit
TACAGAGGGTGCGAGCGTTAATCGGATTTACTGGGCGTAAAGCGTGCGTA30.8645533141210375No Hit
TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTA30.8645533141210375No Hit
TACGTATGTCGCGAGCGTTATCCGGAATTATTGGGCATAAAGGGCATCTA30.8645533141210375No Hit
TACGAAGGATGCAAGCGTTATCCGGATTCATTGGGTTTAAAGGGAGCGTA30.8645533141210375No Hit
TACGGAGGGTGCGAGCGTTAATCGGAATAACTGGGCGTAAAGGGCACGCA20.5763688760806917No Hit
GACGAAGGATGCAAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTA20.5763688760806917No Hit
TACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCA20.5763688760806917No Hit
TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTA20.5763688760806917No Hit
TACGGAAGGTCCTGGTGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTA20.5763688760806917No Hit
AACGTAGGGTGCAAGCGTTGTCCGGAATTACTGGGTGTAAAGGGAGCGCA20.5763688760806917No Hit
TACGTATGTCACAAGCGTTATCCGGATTTATTGGGCGTAAAGCGCGTCTA20.5763688760806917No Hit
TACGTAGGGCGCGAGCGTTGTCCGGAATTATTGGGCGTAAAGAGCTTGTA20.5763688760806917No Hit
TACGTAGGTGGCAAGCGTTATCCGGATTTATTGGGCGTAAAGCGAGCGCA20.5763688760806917No Hit
CACGAAGGATGCAAGCGTTATCCGGATTCATTGGGTTTAAAGGGAGCGTA10.2881844380403458No Hit
TACGTAGGTGGCAAGCGTTGTCCGGAATCATTGGGCGTAAAGCGCGCGCA10.2881844380403458No Hit
GACGAAGGATGCAAGCGTTATCCGGATTCATTGGGTTTAACGGGAGCGTA10.2881844380403458No Hit
TACGTAGGGCGCGAGCGTTGTCCGGAATTATTGGGCGTAAAGGGCGCGTA10.2881844380403458No Hit
TACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGGCTTAAAGCGCGCGCA10.2881844380403458No Hit
TACGAAGGATGCAAGCGTTATCCGGATTCATTGGGCTTAAAGGGAGCGTA10.2881844380403458No Hit
TACGGAAGGTCCAGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGTGTA10.2881844380403458No Hit
TACGTAGGGCGCGAGCGTTGTCCGGAATTATTGGGCGTACAGAGCTTGTA10.2881844380403458No Hit
TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTA10.2881844380403458No Hit
TACGTAGGGCGCGCGCGTTGTCCGGAATTATTGGGCGTAAAGAGCTTGTA10.2881844380403458No Hit
TACGTATGGCGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGCGCTCGTA10.2881844380403458No Hit
TACGGAGGGTGAAAGAGTTAATCGGAATTACTGGGCGGAAAGCGTGCGCA10.2881844380403458No Hit
TACGTAGGTGCCGAGCGTTGTCCGGATTCATTGGGCGTAAAGCGAGCGCA10.2881844380403458No Hit
TACAGAGGTTGCGAGCGTTAATCGGAATTACTGGGCGTAAAGCGAGTGTA10.2881844380403458No Hit
TACGTCTGTCACAAGCGTTATCCGGATTTATTGGGCGTAAAGCGCGTCTA10.2881844380403458No Hit
TACGTAGGGCGCGAGCGTTGTCCGGAATTATTGGGCGTAAAGAGCGTGTA10.2881844380403458No Hit
TACGTAGGGCGCAAGCGTTAATCGGATTTACTGGGCGTAAAGCGTGCGCA10.2881844380403458No Hit
TACGGAGGGTGCAAGCGTTAATCGGAATTATTGGGCGTAAAGCGCACGCA10.2881844380403458No Hit
TACGTAGGTGGCAAGCGTTGTCCGGAATAATTGGGCGTAAAGGGCGCGTA10.2881844380403458No Hit
TACGTAGGGTGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGCTCGTA10.2881844380403458No Hit
TACGTAGGTGGCGAGCGTTATCCGGAATTATTGGGCGTAAAGAGGGAGCA10.2881844380403458No Hit
TACGTAGGGCGCGAGCGTTGTCCGGAATTATTGGGCGTAAAGAGCTCGTA10.2881844380403458No Hit
TACGTAGGGCGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGAGCGCGTA10.2881844380403458No Hit
TACGGAAGGTCCGGGCGTTATCCGGATTTATTGGGCGTAAAGGGAGCGCA10.2881844380403458No Hit
ACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTTACTTAGTT10.2881844380403458No Hit
TACGTAGGGTGCGAGCGTTGTCCGGAATTATTGGGCGTAAAGGGCTTGTA10.2881844380403458No Hit
TACGTAGGGGGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGGGCGCGTA10.2881844380403458No Hit
TACGTAGGGCGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGAGCGCGCA10.2881844380403458No Hit
TACGTAGGGGGCGAGCGTTGTCCGGAATGATTGGGCGTAAAGGGCGCGTA10.2881844380403458No Hit
TACGTAGGTCGCGAGCGTTGTCCGGATTTATTGGGCGTAAAGAGCGTGTA10.2881844380403458No Hit
TACGTAGGGTGCGAGCGTTAATCGGAATTACTGGGCGTAAAGCGAGCGCA10.2881844380403458No Hit
TACGTAGGGGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGCGCGCGTA10.2881844380403458No Hit
TACGTAGGGGGCAAGCGTTAACCGGAATTACTGGGCGTAAAGCGAGCGCA10.2881844380403458No Hit
TACGTAGGTCGCGAGCGTTGTCCGGATTTATTGGGCGTAAAGCGCGTCTA10.2881844380403458No Hit
GACGAAGGATGCAAGCGTTATCCGGATTCATCGTGTTTAAAGGGAGCGTA10.2881844380403458No Hit
TACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGAGCTTGTA10.2881844380403458No Hit
TACGTAGGGTGCGAGCGTTAATCGGAATTACTGGGCGTAAAGCGGGCGCA10.2881844380403458No Hit
TACGTATGTCCCGAGCGTTATCCGGAATTATTGGGCATAAAGGGCATGTA10.2881844380403458No Hit
TACGTATGGAGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGTGCGTA10.2881844380403458No Hit
TACGTATGTCGCAAGCGTTATCCGGATTTATTGGGCATAAAGGGCATCTA10.2881844380403458No Hit
TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGCTTAAAGGGTGCGTA10.2881844380403458No Hit
TACGAAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCGCGTA10.2881844380403458No Hit
TACGTAGGGAGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGCGCGCA10.2881844380403458No Hit
TACCGAGGGTGCGAGCGTTAATCGGAATTACTGGGCGTAAAGCGAGTGTA10.2881844380403458No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGGCAG157.1307295E-7292.0195
GGATGCA100.0016388425194.666677
TGGCAAG100.0016388425194.666679
AGGATGC100.0016388425194.666676
GATGCAA100.0016388425194.666678
ACGTAGG151.0652175E-5194.666672
CGAAGGA100.0016388425194.666673
AGGTGGC100.0016388425194.666676
TACGTAG151.0652175E-5194.666671
GACGAAG100.0016388425194.666671
ATGCAAG100.0016388425194.666679
AAGGATG100.0016388425194.666675
GGTGGCA100.0016388425194.666677
GTGGCAA100.0016388425194.666678
ACGAAGG100.0016388425194.666672
GAAGGAT100.0016388425194.666674
GCAAGCG255.4818025E-538.93333410-14
TTATTGG200.001024093238.93333425-29
GCGAAGG255.4818025E-538.933334190-194
CGAAGGC255.4818025E-538.933334190-194