FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005301911

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005301911
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468
Sequences flagged as poor quality0
Sequence length198-201
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCA6113.034188034188036No Hit
GACGAAGGATGCAAGCGTTATCCGGATTCATTGGGTTTAAAGGGAGCGTA5211.11111111111111No Hit
TACGTAGGTCCCGAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGCGCA4910.47008547008547No Hit
TACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGCGCGCGCA204.273504273504273No Hit
TACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGCGCGCGTA142.9914529914529915No Hit
TACGTAGGGCGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGAGCTCGTA142.9914529914529915No Hit
TACAGAGGGTGCGAGCGTTAATCGGAATTACTGGGCGTAAAGCGAGTGTA142.9914529914529915No Hit
TACAGAGGGTGCAAGCGTTAATCGGATTTACTGGGCGTAAAGCGCGCGTA122.564102564102564No Hit
TACGGAGGGAGCTAGCGTTATTCGGAATTACTGGGCGTAAAGCGCACGTA112.3504273504273505No Hit
TACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCA102.1367521367521367No Hit
TACGGAGGGAGCTAGCGTTGTTCGGAATTACTGGGCGTAAAGCGCACGTA102.1367521367521367No Hit
TACAGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCGCGTA91.9230769230769231No Hit
TACGGAAGGTCCAGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTA91.9230769230769231No Hit
TACGGAAGGTCCGGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTA91.9230769230769231No Hit
TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTA81.7094017094017095No Hit
TACGTAGGGCGCGAGCGTTGTCCGGAATTATTGGGCGTAAAGAGCTTGTA81.7094017094017095No Hit
TACGGAGGGTGCGAGCGTTAATCGGAATAACTGGGCGTAAAGGGCACGCA71.4957264957264957No Hit
TACGTATGTCGCAAGCGTTATCCGGAATTATTGGGCATAAAGGGCATCTA61.282051282051282No Hit
TACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGCGCA61.282051282051282No Hit
TACGTAGGTCCCGAGCGTTATCCGGATTTATTGGGCGTAAAGCGAGCGCA61.282051282051282No Hit
TACGTAGGGCGCGAGCGTTGTCCGGAATTATTGGGCGTAAAGGGCTTGTA51.0683760683760684No Hit
TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTA40.8547008547008548No Hit
TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGCA40.8547008547008548No Hit
TACGTAGGGTGCGAGCGTTATCCGGAATTATTGGGCGTAAAGAGCTCGTA40.8547008547008548No Hit
TACGTAGGGTGCGAGCGTTAATCGGAATTACTGGGCGTAAAGCGAGCGCA40.8547008547008548No Hit
TACGGAAGGTCCAGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGTGTA30.641025641025641No Hit
TACGTAGGGGGCAAGCGTTATCCGGATTCATTGGGCGTAAAGCGCTCGTA30.641025641025641No Hit
TACGAAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCGCGTA30.641025641025641No Hit
TACGAGGGATCCTAGCGTTGTTCGGAATCATTGGGCGTAAAGAGTATGTA30.641025641025641No Hit
TACGTAGGTGGCAAGCGTTATCCGGATTTATTGGGCGTAAAGCGAGCGCA30.641025641025641No Hit
TACCAGCACCCCGAGTGGTCGGGACGATTATTGGGCCTAAAGCATCCGTA30.641025641025641No Hit
TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTA30.641025641025641No Hit
TACGGAAGGTTCGGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTA30.641025641025641No Hit
TACAGAGGGTGCGAGCGTTAATCGGATTTACTGGGCGTAAAGCGTGCGTA20.4273504273504274No Hit
TACGTAGGTGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGCGCGCA20.4273504273504274No Hit
TACGTAGGGTGCGAGCGTTGTCCGGAATTACTGGGCGTAAAGAGCTCGTA20.4273504273504274No Hit
TACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGAGCGCA20.4273504273504274No Hit
TACGTAGGGTGCAAGCGTTGTCCGGAATTACTGGGCGTAAAGAGCTCGTA20.4273504273504274No Hit
TACGTAGGTGGCGAGCGTTGTCCGGATTTACTGGGCGTAAAGGGAGCGTA20.4273504273504274No Hit
GACGAAGGCTGCAAGCGTTATCCGGATTCATTGGGTTTAAAGGGAGCGTA20.4273504273504274No Hit
TACAGAGGGTGCAAGCGTTAATCGGATTTACTGGGCGTAAAGGGTGCGTA20.4273504273504274No Hit
TACGGAGGGTGCGGGCGTTAATCGGAATTACTGGGCTTAAAGCGAGTGTA10.2136752136752137No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGAGGTGGGGGGT10.2136752136752137No Hit
AATGTCAATAGATGTGGTAGAAGTCGTCATTTGGCGAGAAAGCTCAGTCT10.2136752136752137No Hit
TCCGGCTGACTGACTGTAGAGAGATCTCGTATGCCGTCTTCTGCTTGAAA10.2136752136752137Illumina PCR Primer Index 5 (96% over 28bp)
TACGGAGGATCCGAGCGTTATCCGGATTTATTGGGCTTAAAGGGAGCGTA10.2136752136752137No Hit
TACGGGGGGGACTAACGTTATTCATCATAACTGGGCGTAAAGGGTACGTA10.2136752136752137No Hit
TACGGAAGGTCCAGGCGTTATCCGGATTTATTGGGTTTAAATGGATCGTA10.2136752136752137No Hit
TCCGGCTGACTGACTTGCCTCTTATCTCGTATGCCGTCTTCTGCTTGAAA10.2136752136752137TruSeq Adapter, Index 10 (96% over 28bp)
TACGTAGGTCCCGAGCGTTGTCCGGAATTATTGGGCGTAAAGCGCGCGCA10.2136752136752137No Hit
TACGGAAGATCCGGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTA10.2136752136752137No Hit
GTCCGGCTGACTGACTAGCGTAGCATCTCGTATGCCGTCTTCTGCTTGAA10.2136752136752137RNA PCR Primer, Index 24 (96% over 30bp)
TACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTA10.2136752136752137No Hit
TACAGAGGTTGCGAGCGTTAATCGGAATTACTGGGCGTAAAGCGAGTGTA10.2136752136752137No Hit
TACGTAGGGCGCGAGCGTTGTCCGGATTTATTGGGCGTAAAGAGCTTGTA10.2136752136752137No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10.2136752136752137No Hit
TACGTAGGTCGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGAGCTCGTA10.2136752136752137No Hit
TACGTAGGGTGCAAGCGTTATCCGGAATTATTGGGCGTAAAGGGCTCGTA10.2136752136752137No Hit
TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGTGCGTA10.2136752136752137No Hit
TACGGAAGGTCCGGGCGTTATCCGGAATTATTGGGTTTAAAGGGAGCGCA10.2136752136752137No Hit
TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGCGTAAAGCGAGCGCA10.2136752136752137No Hit
TACGTAGGGTGCGAGCGTTGTCCGGAATTATTGGGCGTAAAGGGCTTGTA10.2136752136752137No Hit
TACGTAGGGGGCAAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGCGCA10.2136752136752137No Hit
AATATCTATAACAACTATTTTAAAGCGCCGTGGATACCTGACCGTACCGA10.2136752136752137No Hit
TACGGATGTCGCGAGCGTTATCCGGAATTATTGGGCATAAAGGGCATCTA10.2136752136752137No Hit
TACGGAAGGTCCAGGCGTTATCCGGATTTATTGGGTTTAAAGGGCGTGTA10.2136752136752137No Hit
TACGTAGGGGGCGAGCGTTGTCCGGAATGATTGGGCGTAAAGGGCGCGTA10.2136752136752137No Hit
TACGTAGGGGGCGAGCGTTATCCGGATTCATTGGGCGTAAAGCGCGCGTA10.2136752136752137No Hit
TACGTAGGGTGCGAGCGTTGTCCGGATTTATTGGGCGTAAAGGGCTCGTA10.2136752136752137No Hit
TACGGAAGGTCCATTCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTA10.2136752136752137No Hit
TACGTATGGTGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTA10.2136752136752137No Hit
TACGTAGGTCCCGAGCGTTATCCGGATTTATTGGGCGTAATGCGAGCGCA10.2136752136752137No Hit
TACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGCGCGTA10.2136752136752137No Hit
TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGCGTAAAGGGAGCGCA10.2136752136752137No Hit
TACGGAGGGTGCGAGCGTTATCCGGATTTATTTGGCGTAAAGGGTTTGTA10.2136752136752137No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGTGTGGGT10.2136752136752137No Hit
TACGTAGGGTGCGAGCGTTGTCCGGATTTATTGGGCGGAAAGGGCTCGTA10.2136752136752137No Hit
TACGTAGGGCGCGAGCGTTGTCCGGAATTATTGGGCGTAAAGAGATTGTA10.2136752136752137No Hit
TACGGAGGATGCGAGCGTTATCCGGATTTACTGGGTTTAAAGGGAGCGTA10.2136752136752137No Hit
TACGTAGGGCGCGAGCGTTGTGCGGAATAATTGGGCGTAAAGCGCGCGCA10.2136752136752137No Hit
TACGTAGGTGGCAAGCGTTATCCGGATTTACTGGGCGTAAAGCGAGCGCA10.2136752136752137No Hit
CGCGAGTGGTCGGCAGATTGAGATAAACGGTCACATTAAATTTAACCTGA10.2136752136752137No Hit
TACGTATGTCGCGAGCGTTATCCGGAATTATTGGGCGTAAAGGGCATCTA10.2136752136752137No Hit
TACGGAGGTCCCGAGCGTTGTCCGGATTTATTGGGCGTAAAGCGAGCGCA10.2136752136752137No Hit
TACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGCGCGCGTA10.2136752136752137No Hit
TACGAGGGCTCCTAGCGTTGTTCGGAATCATTGGGCGTAAAGAGTATGTA10.2136752136752137No Hit
TACGTTAACACAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGC10.2136752136752137No Hit
TACGGAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGTGCGTGTA10.2136752136752137No Hit
TACGTATGGAGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTA10.2136752136752137No Hit
TACGTATGGAGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGCA10.2136752136752137No Hit
TACGTAGGGGGCAAGCGTTATCCGGAATTACTGGGTGTAAAGGGAGCGCA10.2136752136752137No Hit
ACTGAATGCCAGCAATCTCTTTTTGAGTCTCATTTTGCATCTCGGCAATC10.2136752136752137No Hit
TACGGAGGGTGCGAGCGTTAATCGGAATTACTGGGCGTAAAGGGCGCGCA10.2136752136752137No Hit
TACGTAGGGCGCGAGCGTTGTCCGGAATTATTGGGCGTACAGAGCTTGTA10.2136752136752137No Hit
TACGTAGGTGGCAAGCGTTATCCGGATTTACTGGGCGTAAAGCGCGCGTA10.2136752136752137No Hit
TACGGAAGGTCCGGGCGTTATCCGGATTTATTGGGTTTTAAGGGAGCGTA10.2136752136752137No Hit
TACGTAGGTGGCAAGCGTTGTCCGGAATTATTGCGCGTAAAGCGCGCGCA10.2136752136752137No Hit
TACGGAAGGTCCAGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCA10.2136752136752137No Hit
CAACCAAATCAAGCAACTTATCAGAAACGGCAGAAGTGTCAGCCTGCAAC10.2136752136752137No Hit
TACGGAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGTGTA10.2136752136752137No Hit
TACGGAGGATGCGAGCGTTATCCGGAATTATTGGGTTTAAAGGGTCCGCA10.2136752136752137No Hit
TACGTAGGGGGCTAGCGTTATCCGGATTTACTGGGCGTAAAGGGTGCGTA10.2136752136752137No Hit
TACGTAGGGCGCGAGCGTTGTCCGGAATTATTGGGCGTAAAGGGATTGTA10.2136752136752137No Hit
AACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTTTGGTGA10.2136752136752137No Hit
TACGTAGGGTGCGAGCGTTAATCGGAATTACTGGGCGTAAAGCGGGCGCA10.2136752136752137No Hit
TACGTAGGTGGCGAGCGTTGTCCGGAATCATTGGGTGTAAAGGGAGCGCA10.2136752136752137No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGG10.2136752136752137No Hit
TCAATAGCAAGGCCACGACGCAATGGAGCAAGACGGCGAGCGCCAACGGC10.2136752136752137No Hit
TACGTAGGTCCCAAGCGTTGTCCGGATTTACTGGGCGTAAAGCGAGCGCA10.2136752136752137No Hit
TACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTGTAAAGGGCGCGTA10.2136752136752137No Hit
TACGGAGGGTGCGAGCGTTAATCGGAATAACTGGGCGTAACGGGCTCGCA10.2136752136752137No Hit
TTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAATTGTGCAAATT10.2136752136752137No Hit
TGTTATAGATATTCAAATAACCCTGAAACAAATGCTTAGGGATTTTATTG10.2136752136752137No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGGCGG100.0013544144219.25195
AAGGCAG100.0013544144219.25195
ACAGAGG151.7546245E-5194.88892
TACAGAG151.7546245E-5194.88891
GGTCCCG100.0020298846194.88897
ACGTAGG151.7546245E-5194.88892
CAGAGGG151.7546245E-5194.88893
GTCCCGA100.0020298846194.88898
TACGTAG151.7546245E-5194.88891
AGGTCCC100.0020298846194.88896
GTAGGTC100.0020298846194.88894
TCCCGAG100.0020298846194.88899
GGGTGCA201.2636883E-7194.88897
GGTGCAA201.2636883E-7194.88898
TAGGTCC100.0020298846194.88895
AGGGTGC257.3305273E-10194.888896
GTGCAAG253.849127E-7155.911129
GAGGGTG253.849127E-7155.911125
AGAGGGT205.532831E-5146.166674
ATCCCCG256.5097076E-538.9777875-79