FastQCFastQC Report
Thu 12 May 2022
EGAF00005304662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005304662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47876090
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCTGTAAGATCTCGTAT3859110.8060620656365213TruSeq Adapter, Index 25 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCTGTAAGATCGCGTAT1409160.2943348130559534TruSeq Adapter, Index 25 (97% over 37bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)