FastQCFastQC Report
Wed 11 May 2022
EGAF00005304684

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005304684
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37663988
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCATAGAGTATCTCGTAT3065980.8140348812770438TruSeq Adapter, Index 7 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCATAGAGTATCGCGTAT1041550.2765373650819982TruSeq Adapter, Index 7 (97% over 37bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT568270.1508788713505325No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)