Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005304710 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 44910711 |
Sequences flagged as poor quality | 0 |
Sequence length | 75 |
%GC | 33 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAATTCGATTGTAATGGAATGGAATAGAA | 118541 | 0.26394817040416035 | No Hit |
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAACTAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA | 105988 | 0.23599715444273414 | RNA PCR Primer, Index 29 (100% over 43bp) |
CGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTCGATTGTAATGGAATGGAATGGAATGGAA | 90633 | 0.20180709229920676 | No Hit |
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAATTTGATTGTAATGGAATGGAATAGAA | 90332 | 0.2011368735623001 | No Hit |
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATAAGAATATAAATTTTAGGGTGATTGA | 71093 | 0.15829854040832264 | No Hit |
CGGAATGGAATGGAATGGAATGGAATTAATTTTATTGTAATGGAATGGAATGGAATGGAATGGAATAGAATGGAA | 59996 | 0.1335895127556542 | No Hit |
CGGAATGGAATGGAATGGAATGGAATGGAATGGAATTAATTCGAGTGTAATGGAATGGAGTGGAATGGAATGGAA | 57675 | 0.12842148056841052 | No Hit |
CGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTTGATTGTAATGGAATGGAATGGAATGGAA | 54914 | 0.12227372663950922 | No Hit |
CGGAATGGAATGGAATGGAATGGAATGGAATTAATTCGAGTGTAATGGAATGGAGTGGAATGGAATGGAATGGAA | 47723 | 0.10626195608437372 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGACGCA | 25 | 3.0962601E-6 | 69.00029 | 24 |
GACCGCG | 15 | 0.0023569558 | 68.99392 | 29 |
CGCTTCA | 15 | 0.0023574033 | 68.99061 | 31 |
TTCCGAC | 15 | 0.0023577467 | 68.98808 | 15 |
CGGGTGC | 22945 | 0.0 | 66.91229 | 1 |
CGGTTAA | 131840 | 0.0 | 64.88976 | 1 |
CGGGTAC | 20160 | 0.0 | 64.29413 | 1 |
CGGCTAA | 710 | 0.0 | 62.96825 | 1 |
CGGGCGC | 43470 | 0.0 | 62.927822 | 1 |
GCGCATC | 45 | 4.3837645E-10 | 61.326218 | 53 |
CGGGTTT | 187715 | 0.0 | 61.186676 | 1 |
CGGAATA | 74085 | 0.0 | 61.015118 | 1 |
GCTGTCG | 775 | 0.0 | 60.976555 | 16 |
CGGGACA | 120 | 0.0 | 60.649647 | 1 |
AGCGCTA | 40 | 1.1981683E-8 | 60.36679 | 31 |
GGGAGGC | 102615 | 0.0 | 60.35322 | 2 |
TGCTGTC | 785 | 0.0 | 60.19979 | 15 |
CTGTCGG | 780 | 0.0 | 60.14345 | 17 |
CGGGAAA | 19745 | 0.0 | 60.134052 | 1 |
CGGTACA | 150 | 0.0 | 60.07204 | 1 |