EGAF00005304714 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005304714
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	43320506
Sequences flagged as poor quality	0
Sequence length	75
%GC	33

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAATTTGATTGTAATGGAATGGAATAGAA	144146	0.33274311246502986	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCACGATATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA	129768	0.29955328776630635	RNA PCR Primer, Index 31 (100% over 43bp)
CGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTTGATTGTAATGGAATGGAATGGAATGGAA	70736	0.1632852580253795	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAATTCGATTGTAATGGAATGGAATAGAA	64357	0.14856012993015363	No Hit
CGGAATGGAATGGAATGGAATGGAATTAATTTTATTGTAATGGAATGGAATGGAATGGAATGGAATAGAATGGAA	60770	0.14027998657264068	No Hit
CGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGTGGAATGGAATGGAATGGAATGGAAT	55604	0.1283549181073739	No Hit
TGGGTGGAGTGGAATGGAATGTAATGGAGTGGAATGTAATGGAATTTAGTGGAATGGAATGGAATGGAATGGAAT	45012	0.10390460351501897	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGACC	20	8.510442E-5	69.01189	60
ACGACCG	20	8.510977E-5	69.01101	61
CGGGTGC	23015	0.0	66.27258	1
CGGTTAA	115295	0.0	64.64226	1
CGGGTAC	20665	0.0	63.86419	1
CGGGCGC	47955	0.0	63.02168	1
TGCCGAC	115	0.0	62.99833	48
CGGAATA	63230	0.0	61.529766	1
GCCGTCA	45	4.3837645E-10	61.343964	49
CGGCTAA	465	0.0	60.90833	1
GCCGACT	120	0.0	60.385468	49
GGGAGGC	108475	0.0	60.096153	2
CGGGTTT	157330	0.0	59.93971	1
GCCGTCT	22715	0.0	59.36578	49
CTGCTTG	23145	0.0	59.352623	57
CTTCTGC	22990	0.0	59.31634	54
TGCCGTC	22890	0.0	59.261868	48
CCGTCTT	22720	0.0	59.26166	50
TTCTGCT	23045	0.0	59.25121	55
CGTCTTC	22720	0.0	59.24661	51