FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005304741

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005304741
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29446561
Sequences flagged as poor quality0
Sequence length75
%GC30

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCGCGTTAATTCCATTCCATTCCATTC802350.2724766399716422No Hit
CAAAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCGCGTTAATTCCATTCCATTCCATTC498640.1693372614887015No Hit
CAACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACCAAAATAATCTCGATCTCCTAACCTC342590.11634295767169552No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCAAATTAATTCCATTCCATTCCATTC329670.11195534853798378No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCGAATTAATTCCATTCCATTCCATTC304590.1034382249254845No Hit
CAACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCTTATTAACCAAAATAATCTCGATCTCCTAACCTC295680.10041240469472819No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)