EGAF00005304797 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005304797
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	33663742
Sequences flagged as poor quality	0
Sequence length	75
%GC	30

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CAAATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCGCGTTAATTCCATTCCATTCCATTC	171330	0.5089452028238571	No Hit
CAAAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCGCGTTAATTCCATTCCATTCCATTC	76399	0.22694743798832587	No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCAAATTAATTCCATTCCATTCCATTC	67659	0.20098478653977325	No Hit
CAAATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCGAATTAATTCCATTCCATTCCATTC	49980	0.14846834318062443	No Hit
CAAATAATTCCATTCCATTAAATTCCATTCCATTCCATTCCCCTACACTTAAATTAATTCCATTCCATTCCATTC	48010	0.14261634966190034	No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCGAATTAATTCCATTCCATTCCATTC	37729	0.11207607282636614	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGCGTT	84005	66.88214	49
CTCGCGT	81290	66.515755	48
GCGTTAA	81315	66.26557	51
GTTAATT	89990	65.891335	53
CGCGTTA	82950	65.61639	50
GCGTTGA	1050	65.36691	51
ACTCGCG	83105	64.65241	47
CGTTGAT	1135	64.42229	52
CACTCGC	90180	64.20002	46
CGTTAAT	90230	63.888924	52
ACACTCG	146460	63.7593	45
GTAGCGG	865	63.3956	43
TAGTAGC	925	62.6407	41
GTTGATT	1305	62.637436	53
GGACCAG	935	61.985752	19
CTCGAGT	1860	61.745068	48
AGGACCA	950	61.733307	18
TAGCGGT	890	61.614826	44
GCCATTC	47735	61.006035	10
TAGGACC	960	60.7309	17