EGAF00005304800 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005304800
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	42552167
Sequences flagged as poor quality	0
Sequence length	75
%GC	34

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAATTTGATTGTAATGGAATGGAATAGAA	76790	0.18046084468506624	No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATAAGAATATAAATTTTAGGGTGATTGA	62043	0.14580456031769193	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAATTCGATTGTAATGGAATGGAATAGAA	56035	0.13168542039233866	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTATACATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA	51668	0.12142272331277511	RNA PCR Primer, Index 39 (100% over 43bp)
CGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTTGATTGTAATGGAATGGAATGGAATGGAA	50179	0.11792348906696103	No Hit
CGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTCGATTGTAATGGAATGGAATGGAATGGAA	46665	0.10966539024910293	No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGCGGGCGGATTACGAGGTTAGGAGATC	44940	0.10561154265069508	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGGTGC	24690	66.23384	1
CGGGTAC	28055	65.87594	1
CGGTTAA	142695	65.85076	1
CGGGCGC	74610	65.33768	1
CGGCTAA	565	62.98734	1
CGGTCAA	305	62.305637	1
GCCGTCT	8175	61.825306	49
CCGTCTT	8170	61.82092	50
TGCCGTC	8195	61.80072	48
CGTCTTC	8205	61.599182	51
CTGCTTG	8280	61.58158	57
TTCTGCT	8265	61.442894	55
ATGCCGT	8260	61.397926	47
TCTGCTT	8300	61.35006	56
TCTTCTG	8225	61.238594	53
GTCTTCT	8265	61.193745	52
CTTCTGC	8290	61.132755	54
TATGCCG	8410	60.963276	46
CGGAATA	52325	60.960857	1
GTATGCC	8415	60.925697	45