FastQCFastQC Report
Wed 11 May 2022
EGAF00005304801

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005304801
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42552167
Sequences flagged as poor quality0
Sequence length75
%GC31

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCGCGTTAATTCCATTCCATTCCATTC1754910.41241377906793797No Hit
CAAAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCGCGTTAATTCCATTCCATTCCATTC1097880.25800801167188503No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCAAATTAATTCCATTCCATTCCATTC665980.15650906803406744No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCGAATTAATTCCATTCCATTCCATTC647120.15207686132647488No Hit
CAAATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCGAATTAATTCCATTCCATTCCATTC555650.13058089380030868No Hit
CAAATAATTCCATTCCATTAAATTCCATTCCATTCCATTCCCCTACACTTAAATTAATTCCATTCCATTCCATTC549700.12918261013593033No Hit
CAAAAAAAAAAACCCCATTCTATACCAACACCTATTCTAATTTTTCAATCACCCTAAAATTTATATTCTTATCCT462040.10858201416628205No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)