EGAF00005304811 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005304811
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	27876583
Sequences flagged as poor quality	0
Sequence length	75
%GC	30

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CAAATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCGCGTTAATTCCATTCCATTCCATTC	97868	0.3510760267856358	No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCAAATTAATTCCATTCCATTCCATTC	77740	0.27887205544524596	No Hit
CAAAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCGCGTTAATTCCATTCCATTCCATTC	60354	0.21650429681428313	No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTACATTCCCCTACACTCACATTAATTCCATTCCATTCCATTC	49420	0.1772814121443794	No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTACATTCCCCTACACTCGCGTTAATTCCATTCCATTCCATTC	44136	0.1583264347714352	No Hit
CAAAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCACATTAATTCCATTCCATTCCATTC	40014	0.1435398305452286	No Hit
CAAATAATTCCATTCCATTAAATTCCATTCCATTCCATTCCCCTACACTTAAATTAATTCCATTCCATTCCATTC	38637	0.13860020074913773	No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTACATTCCCCTACACTCAAATTAATTCCATTCCATTCCATTC	35440	0.12713179373526518	No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCAAATTAATTCCATTCCATTCCACTC	28455	0.10207492073185584	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGCGTT	54605	66.455986	49
CTCGCGT	53735	66.40845	48
GCGTTAA	53650	65.96674	51
GTTAATT	62530	65.78997	53
CTCGGGT	100	65.54592	48
CGCGTTA	54725	65.20673	50
TAGCGGT	490	64.76741	44
ACTCGCG	54055	64.52785	47
GCGTTGA	540	64.52341	51
CTCGAGT	870	64.23738	48
GCGTTAG	140	64.06709	51
CACTCGC	66255	64.04902	46
ACACTCG	103535	63.942787	45
TAGTAGC	515	63.634987	41
TAGGACC	505	63.527504	17
GTAGCGG	495	63.416313	43
CGTTAAT	63925	63.123844	52
TTAGTAG	520	63.023113	40
AGTAGCG	515	62.295303	42
CGTTGAT	620	61.761948	52