EGAF00005304827 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005304827
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	31265879
Sequences flagged as poor quality	0
Sequence length	75
%GC	30

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CAAATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCGCGTTAATTCCATTCCATTCCATTC	187262	0.5989340648315052	No Hit
CAAAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCGCGTTAATTCCATTCCATTCCATTC	88864	0.2842203796669206	No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCAAATTAATTCCATTCCATTCCATTC	74470	0.23818297256251775	No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCGAATTAATTCCATTCCATTCCATTC	66937	0.21408961507207264	No Hit
CAAATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCGAATTAATTCCATTCCATTCCATTC	64088	0.20497744522071487	No Hit
CAAATAATTCCATTCCATTAAATTCCATTCCATTCCATTCCCCTACACTTAAATTAATTCCATTCCATTCCATTC	61206	0.1957597290004225	No Hit
CAAATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCGCATTAATTCCATTCCATTCCATTC	42316	0.13534242872237817	No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTACATTCCCCTACACTCGCGTTAATTCCATTCCATTCCATTC	40896	0.13080073648337218	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCGTT	91685	0.0	67.16349	49
CTCGCGT	90075	0.0	66.962654	48
GCGTTAA	89525	0.0	66.727844	51
CGCGTTA	90955	0.0	66.438995	50
GTTAATT	108035	0.0	66.37844	53
ACTCGCG	90080	0.0	65.958435	47
CACTCGC	112325	0.0	65.517784	46
CGTTAAT	108705	0.0	65.1822	52
GGACCGT	360	0.0	65.162285	47
ACACTCG	198750	0.0	65.141205	45
GCGTTGA	920	0.0	63.744087	51
GCATTAA	22680	0.0	63.10724	51
CTCGCAT	23095	0.0	62.573227	48
GCGTTAG	160	0.0	62.525448	51
CGTTGAT	1045	0.0	62.391235	52
TGCCGGA	400	0.0	62.093937	43
ATGCCGG	410	0.0	61.420147	42
GCGGGTT	45	4.3837645E-10	61.329697	49
TTCACGC	40950	0.0	61.16866	5
ATTCCCC	354135	0.0	61.091026	37