FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005304833

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005304833
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42037759
Sequences flagged as poor quality0
Sequence length75
%GC30

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCGCGTTAATTCCATTCCATTCCATTC1971600.46900692303792885No Hit
CAAAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCGCGTTAATTCCATTCCATTCCATTC1089210.2591027747221254No Hit
CAAATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTCGAATTAATTCCATTCCATTCCATTC703590.1673709580950783No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCGAATTAATTCCATTCCATTCCATTC693360.16493743160761734No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTCAAATTAATTCCATTCCATTCCATTC569570.1354900959397003No Hit
CAAATAATTCCATTCCATTAAATTCCATTCCATTCCATTCCCCTACACTTAAATTAATTCCATTCCATTCCATTC562440.1337940017211669No Hit
CAACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACCAAAATAATCTCGATCTCCTAACCTC460080.109444463963933No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)