EGAF00005304852 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005304852
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	47333329
Sequences flagged as poor quality	0
Sequence length	75
%GC	34

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAATTTGATTGTAATGGAATGGAATAGAA	178494	0.3771000345232426	No Hit
CGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTTGATTGTAATGGAATGGAATGGAATGGAA	96779	0.20446269477475376	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATGAAATGTAATGGATTTAATTCGATTGTAATGGAATGGAATAGAA	56276	0.11889296863104643	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAAAAGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA	51650	0.10911972829969344	RNA PCR Primer, Index 28 (100% over 43bp)
TGGAATGGAATGGAATGGAATGGAATGTAAAGTAATGGAATTAATTTGATTGTAATGGAATGGAATGGAATGGAA	50938	0.10761550280986996	No Hit
CGGAATGGAATGGAATGGAATGGAATGGAATTAATTTGAGTGTAATGGAATGGAGTGGAATGGAATGGAATGGAA	48421	0.10229789668924406	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGGGTGC	22620	66.02257	1
CGGTTAA	139510	65.176926	1
CGGGTAC	23120	64.19149	1
CGGGCGC	59745	63.373245	1
AACGATC	665	62.25014	60
CGGCTAA	555	62.21655	1
GCCGTCT	8640	59.810623	49
CGGGTTT	206340	59.806133	1
CGTCTTC	8670	59.7267	51
TGCCGTC	8670	59.68413	48
CGGAATG	509195	59.63432	1
CCGTCTT	8670	59.60367	50
GTCTTCT	8740	59.564114	52
CTTCTGC	8785	59.49463	54
TTCTGCT	8810	59.44328	55
TCTTCTG	8765	59.433582	53
TCTGCTT	8830	59.386784	56
ATGCCGT	8745	59.33005	47
CTGCTTG	8680	59.300175	57
TATGCCG	8775	59.127213	46