FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005304875

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005304875
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33824603
Sequences flagged as poor quality0
Sequence length100
%GC31

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTC3860701.1413881191746729No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTC3646181.0779668278737817No Hit
CAAAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTC2059180.6087817202170858No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTACATTCCCCTACACTC1072810.3171685414903465No Hit
CAAAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCATTCCATTC994060.29388667178148403No Hit
CAACCTATTTATCTATTTATTAACTTTAAATCCAAATTATAAAACCAATT830750.24560524775412737No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCGAATAACTAAAACTACA810140.23951204985317937No Hit
CAACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACC755850.22346160278658703No Hit
CAAATAATTCCATTCCATTAAATTCCATTCCATTCCATTCCCCTACACTT653300.19314343467682385No Hit
CAAACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAAC636500.18817663580559985No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCAAATAACTAAAACTACA618500.18285506558643128No Hit
CAACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCTTATTAACC389130.11504347885472595No Hit
CAAAAAATTCCATTCCATTACATTCCATTACATTCCATTCCCCTACACTC361940.10700495139588187No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)