FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005304881

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005304881
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34613279
Sequences flagged as poor quality0
Sequence length100
%GC31

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTC3762591.0870365676710376No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTC3024750.8738698231970453No Hit
CAAAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTC2010220.580765549545306No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTACATTCCCCTACACTC1067870.30851454437471815No Hit
CAAAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCATTCCATTC948300.2739699986239385No Hit
CAAACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAAC844870.24408840318191177No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCGAATAACTAAAACTACA815610.23563500008190497No Hit
CAACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACC756490.21855485000424257No Hit
CAACCTATTTATCTATTTATTAACTTTAAATCCAAATTATAAAACCAATT741970.2143599281651415No Hit
CAAATAATTCCATTCCATTAAATTCCATTCCATTCCATTCCCCTACACTT612970.1770909944706481No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCAAATAACTAAAACTACA603280.17429149084661988No Hit
CAACTACGTTTATTTATTTATTTTTTTAATTATTTTACTTTTTTTTAATT435140.12571475820016936No Hit
CAACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCTTATTAACC420130.12137827219432173No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)