FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005304893

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005304893
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36400558
Sequences flagged as poor quality0
Sequence length100
%GC30

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTC3922531.0776016125906642No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTC2853670.783963256826997No Hit
CAAAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTC1906580.523777684946478No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTACATTCCCCTACACTC1281930.3521731727299345No Hit
CAAAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCATTCCATTC933030.2563229937299313No Hit
CAAACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAAC749130.20580179018134834No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCGAATAACTAAAACTACA708900.19474976180310202No Hit
CAACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACC684860.18814546744036176No Hit
CAAATAATTCCATTCCATTAAATTCCATTCCATTCCATTCCCCTACACTT661560.18174446666449454No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCAAATAACTAAAACTACA576180.1582887822763596No Hit
CAACCTATTTATCTATTTATTAACTTTAAATCCAAATTATAAAACCAATT552390.15175316817945483No Hit
CAACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCTTATTAACC405010.11126477786411956No Hit
CAAATAACTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTC376490.1034297331376074No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)