FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005304901

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005304901
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35764044
Sequences flagged as poor quality0
Sequence length100
%GC31

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTC2370890.6629255908532045No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTC1697770.4747142129676387No Hit
CAAAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTC1166280.32610406138634657No Hit
CAACCTATTTATCTATTTATTAACTTTAAATCCAAATTATAAAACCAATT792150.22149340829577327No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTACATTCCCCTACACTC743700.20794628258482178No Hit
CAACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACC730680.20430575468478898No Hit
CAAACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAAC576780.16127370830882548No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCGAATAACTAAAACTACA573320.1603062561940702No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCAAATAACTAAAACTACA525350.14689334349325822No Hit
CAAAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCATTCCATTC518470.14496962368125932No Hit
CAACCTCCCAAAATACTAAAATAACAAACGTAAACCATCGTAACTAACCG454720.12714445827211263No Hit
CAACGTATTATATTATATTATATTATATTATATTATATTATATTATATTA449470.12567650347371231No Hit
CAACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCTTATTAACC365490.10219481890806309No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)