FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005304905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005304905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45679858
Sequences flagged as poor quality0
Sequence length100
%GC31

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTC8979611.9657701212643874No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTC7481261.6377590315626638No Hit
CAAAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTC4044250.8853464474429846No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTACATTCCCCTACACTC2424430.5307437689495444No Hit
CAAAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCATTCCATTC2153280.47138500299190944No Hit
CAAATAATTCCATTCCATTAAATTCCATTCCATTCCATTCCCCTACACTT1394970.3053796708387316No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCGAATAACTAAAACTACA911710.19958687262118896No Hit
CAAACAATAAACCATAACCAATACTACCAATCAATACTCATCATTAATAA804400.176095118334212No Hit
CAACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACC792860.17356884077879578No Hit
CAAATAACTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTC774960.16965026467464064No Hit
CAAAAAATTCCATTCCATTACATTCCATTACATTCCATTCCCCTACACTC732700.16039892243097603No Hit
CAAAAAAAAAAACCCCATTCTATACCAACACCTATTCTAATTTTTCAATC716060.15675617905817485No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCAAATAACTAAAACTACA655310.1434571009393243No Hit
CAAAATAATCCAAATCAATTTCTATCTACTTCAAATTCCTCCCTATACAA653610.1430849456668626No Hit
CAAACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAAC639420.13997854371613852No Hit
CAAATATCAAAAAAATACCTTAAATAACCTCTAAAACTCAAAAATAAAAA584210.1278922539557807No Hit
CAAACTCTACCATCTTAACAAACCCTATTCTTAAATAAATATAAATATAA579850.1269377851393496No Hit
CAAAATAATAAATTACAATATAAAAAATTATTCCAAAACCTAATAAAATA494650.10828623854303575No Hit
CAAATAATTCCATTCCATTACATTCCTTTCCATTACATTCCCCTACACTC472860.10351608360954186No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)