FastQCFastQC Report
Wed 11 May 2022
EGAF00005304909

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005304909
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40878516
Sequences flagged as poor quality0
Sequence length100
%GC30

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATAATTCCATTCCATTACATTCCGTTCCATTACATTCCCCTACACTC3417280.8359598963915422No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTC3094720.7570529223712524No Hit
CAAAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCCCTACACTC2172850.5315383758060102No Hit
CAAATAATTCCATTCCATTACATTCCATTCCATTACATTCCCCTACACTC2005680.490644034142531No Hit
CAAAAAATTCCATTCCATTACATTCCATTCCATTCCATTCCATTCCATTC1072400.26233829036259537No Hit
CAACCTATTTATCTATTTATTAACTTTAAATCCAAATTATAAAACCAATT934610.228631098056495No Hit
CAACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCGTATTAACC718520.1757695900702462No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCGAATAACTAAAACTACA701590.17162805029419365No Hit
CAAACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAAC669460.16376817592889134No Hit
CAAATAATTCCATTCCATTAAATTCCATTCCATTCCATTCCCCTACACTT614680.15036749377105568No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCAAATAACTAAAACTACA570480.13955496818915833No Hit
CAACTACATTTATTTATTTATTTTTTTAATTATTTTACTTTTTTTTAATT514990.1259806006656406No Hit
CAACTAATTTTTTATATTTTTAATAAAAACGAAATTTCACCTTATTAACC415350.10160593892400596No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)