FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308073

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308073
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35616977
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA1447900.40651962124691265No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1137690.31942351536459707No Hit
CCACCTACTAAGAACGGCCATGCACCAC1064440.2988574802403921No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC968440.2719040417158368No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT769170.2159560032284604No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG680270.19099599609478368No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT660910.18556038599233168No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA659260.1850971237676909No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT585860.1644889738957913No Hit
ACGGCCATGCACCACCACCCACGGAATC510830.14342317709894356No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA508710.1428279553315263No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT484500.136030635053615No Hit
TTCGGTCTTGATTAATGAAAACATTCTT450230.12640881903031803No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT434680.12204292351930934No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA410590.11527929503955375No Hit
GCTGCTTTTAGGCCTACTATGGGTGTTA394060.11063824984360689No Hit
GGGCATCGTTTATGGTCGGAACTACGAC389650.10940007626138513No Hit
CCACCAACTAAGAACGGCCATGCACCAC387040.10866727965149878No Hit
GGGCATCACAGACCTGTTATTGCTCAAT381320.10706130393941068No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)