FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308075

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308075
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37060082
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA1523960.4112133373045424No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1186170.32006674998722345No Hit
CCACCTACTAAGAACGGCCATGCACCAC1102070.29737386981496694No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC999670.2697430620903645No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT804750.21714738785521304No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG721720.1947432280371101No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA702150.1894626137092735No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT682120.1840578766123615No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT617600.1666483090890085No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA552090.14897160778003676No Hit
ACGGCCATGCACCACCACCCACGGAATC525530.141804867026468No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT504780.1362058508127424No Hit
TTCGGTCTTGATTAATGAAAACATTCTT469540.1266969673731429No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT452950.12222045272322928No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA430350.11612224711213537No Hit
GCTGCTTTTAGGCCTACTATGGGTGTTA413250.11150811808781211No Hit
GGGCATCGTTTATGGTCGGAACTACGAC406280.10962738830421369No Hit
CCACCAACTAAGAACGGCCATGCACCAC399850.10789236785822547No Hit
GGGCATCACAGACCTGTTATTGCTCAAT397050.10713683795950586No Hit
TGCCCTACAATGGATCCTCGTTAAAGGA375180.10123560978629244No Hit
TACGGGCGGTGTGTACAAAGGGCAGGGA371910.10035325879743061No Hit

[OK]Adapter Content

Adapter graph