FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005308123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences173295988
Sequences flagged as poor quality0
Sequence length28
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA6356230.36678460207630426No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA4958800.28614626669833815No Hit
CCACCTACTAAGAACGGCCATGCACCAC4481500.2586037941051469No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG4379170.25269886801995667No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA3655160.21092005892254123No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC2539130.146519837493295No Hit
CCACCAACTAAGAACGGCCATGCACCAC2108900.1216935270307585No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT2059730.11885618494526255No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT2021870.11667148347369705No Hit
GGCGACTTTTACTTCCTCTAGATAGTCA1772070.10225683932163507No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT1748740.10091058772808982No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)