FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308187

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308187
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83711943
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA3082720.3682533088498495No Hit
CGTTCGTTATCGGAATTAACCAGACAAA2744240.3278194128166395No Hit
CCACCTACTAAGAACGGCCATGCACCAC2740060.3273200814368865No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC2352970.28107936761185914No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1918580.22918832501594186No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT1773140.21181445997496437No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT1666610.19908867722733423No Hit
GGCGACTTTTACTTCCTCTAGATAGTCA1475480.17625680961675924No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT1411550.16861990648096653No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA1246850.14894529446055266No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA1033750.12348895067457698No Hit
CCACCAACTAAGAACGGCCATGCACCAC1016100.12138052989643305No Hit
TGCCCTACAATGGATCCTCGTTAAAGGA967680.11559640898551357No Hit
ACGGGCTGTTAATTGTCAGTTCAGTGTT892720.10664189218496578No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)