FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68535880
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCTACTAAGAACGGCCATGCACCAC1536390.22417309006610842No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA1400100.20428715586638707No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1338210.19525684940501237No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA1215240.17731442275199502No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1026350.1497536764684425No Hit
CGTTCGTTATCGGAATTAACCAGACAAA903740.13186377704641716No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT817220.11923973253133979No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA748210.10917055416812332No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT712800.10400391736416019No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)