FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005308219

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308219
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121093096
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA2236660.1847058233608958No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1296230.10704408779836631No Hit
GATCGGAAGAGCACACGTCTGAACTCCA1263740.10436102814647666Illumina Multiplexing PCR Primer 2.01 (100% over 28bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)