FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005308285

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308285
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109128392
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA2486720.22787103836369185No Hit
CCACCTACTAAGAACGGCCATGCACCAC1983990.18180328360377565No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA1605400.1471111202664839No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1313300.12034448377100618No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1227010.11243728396547802No Hit
CCTTTAAGTTTCAGCTTTGCAACCATAC1181130.10823306184150501No Hit
GATCGGAAGAGCACACGTCTGAACTCCA1174960.10766767277208666Illumina Multiplexing PCR Primer 2.01 (100% over 28bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)