FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005308295

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308295
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107237181
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA5033110.4693437437524584No Hit
CCACCTACTAAGAACGGCCATGCACCAC1676990.15638139536696696No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA1563510.14579924476008No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1381780.12885269708833544No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1258720.11737719961139226No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA1099590.10253812994207671No Hit
GATCGGAAGAGCACACGTCTGAACTCCA1090380.10167928603046737Illumina Multiplexing PCR Primer 2.01 (100% over 28bp)
CCTCTATATAAATGCGTAGGGGTTTTAG1080640.10077101896216387No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)