FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005308297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106507507
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA5015490.47090483490520535No Hit
CCACCTACTAAGAACGGCCATGCACCAC1675400.1573034659425462No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA1555530.14604886019912192No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1386900.13021617340081015No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1262120.1185005672886513No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA1094410.1027542593781676No Hit
GATCGGAAGAGCACACGTCTGAACTCCA1067300.10020889889010359Illumina Multiplexing PCR Primer 2.01 (100% over 28bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)