FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005308307

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308307
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105491374
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGGGCTGTTAATTGTCAGTTCAGTGTT2399480.22745746017110366No Hit
CCTCTATATAAATGCGTAGGGGTTTTAG2082620.19742088106654104No Hit
GCACTCTACTCTCAGTTTACTGCTAAAT1784630.16917307380980742No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA1511560.14328754500818236No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1487750.14103048842647553No Hit
ACGCCGAGTTCCTTTTACTTTTTTTAAC1420240.13463091304507988No Hit
CGTTGGGTTGACAGTGAGGGTAATAATG1412810.13392659005465224No Hit
GCTGCTTTTAGGCCTACTATGGGTGTTA1312060.12437604614003794No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA1288650.12215690735054793No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)