FastQCFastQC Report
Sun 5 Jun 2022
EGAF00005308315

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308315
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100269109
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA4216650.420533307022804No Hit
CCACCTACTAAGAACGGCCATGCACCAC2209280.22033505852734767No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT1711380.1706786882887331No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT1674550.16700557297262908No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1614670.16103364397104597No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT1580720.1576477557011103No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1496480.14924636460068674No Hit
TTCGGTCTTGATTAATGAAAACATTCTT1188230.118504094815483No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1180800.11776308892901402No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT1136180.11331306434567No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA1119970.11169641489484064No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA1030880.10281132547014056No Hit
GGCGACTTTTACTTCCTCTAGATAGTCA1027410.10246525677215301No Hit
GCACTCTAATTTTTTCAAAGTAAACGCT1026560.10238048490088807No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)