FastQCFastQC Report
Wed 11 May 2022
EGAF00005308317

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308317
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences104382283
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA4405440.4220486344411532No Hit
CCACCTACTAAGAACGGCCATGCACCAC2293310.21970299308360597No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT1792260.17170155207277848No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT1761550.1687594819132285No Hit
CGTTCGTTATCGGAATTAACCAGACAAA1681220.16106373147634642No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT1667630.15976178639434435No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1547180.14822247181545167No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1249130.11966877559096882No Hit
TTCGGTCTTGATTAATGAAAACATTCTT1246550.11942160720895519No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT1185900.11361123419766553No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA1177470.11280362587969071No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAA1108250.10617223231264256No Hit
GCACTCTAATTTTTTCAAAGTAAACGCT1098280.1052170893790472No Hit
GGCGACTTTTACTTCCTCTAGATAGTCA1084840.10392951455181336No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)