FastQCFastQC Report
Thu 12 May 2022
EGAF00005308379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166540618
Sequences flagged as poor quality0
Sequence length28
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA6090980.36573540275922356No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA4731270.2840910557927676No Hit
CCACCTACTAAGAACGGCCATGCACCAC4316040.25915839942421737No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG4150590.24922388603121431No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA3419020.205296464073407No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC2458530.14762344643154862No Hit
CCACCAACTAAGAACGGCCATGCACCAC2036720.12229569125292905No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT1962700.11785112986670916No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT1941040.11655054624572128No Hit
GGCGACTTTTACTTCCTCTAGATAGTCA1676130.10064391618866216No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)