FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005308381

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308381
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences165931165
Sequences flagged as poor quality0
Sequence length28
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA6041140.36407506691102903No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA4705240.28356577861669324No Hit
CCACCTACTAAGAACGGCCATGCACCAC4286320.2583191650585952No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG4099310.24704882895265637No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA3411310.20558585242259944No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC2422290.14598161834155746No Hit
CCACCAACTAAGAACGGCCATGCACCAC2019590.12171251856153725No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT1939660.11689546083763107No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT1922590.1158667209984333No Hit
GGCGACTTTTACTTCCTCTAGATAGTCA1672820.1008140936032119No Hit

[OK]Adapter Content

Adapter graph