FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005308417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55433114
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA1589530.286747376306516No Hit
CCACCTACTAAGAACGGCCATGCACCAC1010960.18237474445328833No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC961040.17336929691519765No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA722060.13025788159763135No Hit
CGTTCGTTATCGGAATTAACCAGACAAA637970.11508824851513844No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT619860.11182124821636397No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA596480.10760355263462199No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT562980.10156023347344333No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG557200.10051753542115638No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)