FastQCFastQC Report
Sat 4 May 2024
EGAF00005308425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005308425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences139864526
Total Bases3.9 Gbp
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCGTTCGTTATCGGAATTAACCAGA5710980.4083222646462907No Hit
CGTTCGTTATCGGAATTAACCAGACAAA3731910.26682319718439546No Hit
CCACCTACTAAGAACGGCCATGCACCAC3048670.2179730691683751No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATA1874110.13399466280677919No Hit
TGTTCCGTTGGTCAAGTTATTGGATCAA1592550.1138637541301931No Hit
GGCGACTTTTACTTCCTCTAGATAGTCA1580940.11303366516253022No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC1525510.10907054444956256No Hit
AGGTCCGTCTTGCGCCGGTCCAAGAATT1495000.10688914786012288No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)